PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g104900.2.1
Common NameLOC101246188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 199aa    MW: 22851.3 Da    PI: 4.6928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g104900.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.11.7e-3681311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++PwdL+ k+  e ++wyf+s+r +        +r+t++gyWk+ g d++
  Solyc01g104900.2.1   8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLNLYPYDPWDLDGKAMVEGNKWYFYSRRTQ--------SRITENGYWKSLGVDEP 89 
                         79*************************999.99**************977777899******9854........799************** PP

                 NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+     +++ vg+kk  +fy g+ p+g+kt+Wvm+e++l
  Solyc01g104900.2.1  90 IFSTghnnnNNNIVGMKKYYAFYLGELPEGVKTNWVMQEFSL 131
                         ***9776666666***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-476163IPR003441NAC domain
PROSITE profilePS5100545.1818165IPR003441NAC domain
PfamPF023654.9E-229131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGDSNVKLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLNLYPYDP WDLDGKAMVE  60
GNKWYFYSRR TQSRITENGY WKSLGVDEPI FSTGHNNNNN NIVGMKKYYA FYLGELPEGV  120
KTNWVMQEFS LNSESSSGSS RSSSKRRTRS KIDYSGWVIC RVYEHNYDND DDNNGPELSC  180
LDEVFLSLDD LDEISLPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-37416613166NO APICAL MERISTEM PROTEIN
1ut4_B5e-37416613166NO APICAL MERISTEM PROTEIN
1ut7_A5e-37416613166NO APICAL MERISTEM PROTEIN
1ut7_B5e-37416613166NO APICAL MERISTEM PROTEIN
3swm_A5e-37416616169NAC domain-containing protein 19
3swm_B5e-37416616169NAC domain-containing protein 19
3swm_C5e-37416616169NAC domain-containing protein 19
3swm_D5e-37416616169NAC domain-containing protein 19
3swp_A5e-37416616169NAC domain-containing protein 19
3swp_B5e-37416616169NAC domain-containing protein 19
3swp_C5e-37416616169NAC domain-containing protein 19
3swp_D5e-37416616169NAC domain-containing protein 19
4dul_A5e-37416613166NAC domain-containing protein 19
4dul_B5e-37416613166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.208040.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230640.11e-147PREDICTED: NAC transcription factor 25
SwissprotQ8GWK68e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLK4B2621e-147K4B262_SOLLC; Uncharacterized protein
STRINGSolyc01g104900.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-75xylem NAC domain 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]